STRait Razor

Laboratory Faculty & Staff | R&D Lab Publications | Excel Workbooks | mitoSave | STRait Razor |Visiting Scientists | Notable Former Students
Welcome to the official home of STRait Razor — the STR Allele Identification Tool!  The current stable version of this program is v2s. The complete v2s package can be found below, in .zip format. Updates to this program will be posted to this page as they are created.


DOWNLOAD:

 

STRait Razor v2s

 

UPDATE: **05/5/2017**

ForenSeq config file updated to version 1.2- Private mutations in HG38 for three loci (D5S818, D20S482, and rs430046), minor allele variant (0.36) in HG38 for one locus (rs2342747), and low frequency variant in one sample (NA19043) in 1kG create potential for private mutations to dropout due to default [1 SNP allowed in the anchor].

Config changelog has been updated with the samples from 1000 genomes that would be affected at the given loci. Only two of these loci have phased SNPs in versions <v1.2.

D5S818 =13 individuals of 2504

D12S291= 1 individual of 2504

These two loci in these individuals will dropout when the default conditions(one SNP allowed) are run with configs prior to v1.2. However, if the allowed SNPs is raised to two, alleles would be reported.

Changelog can be found in the zip file.

 

UPDATE: **04/21/2017**

ForenSeq config file updated to version 1.1- Reverse strand loci not being reported due to transposed reverse anchors (left<–>right). Config changelog created and placed into downloadable

 

Download Now

The downloadable found above contains the Perl script as well as the STRait Razor Analysis (SRA) to visualize the data.

User manuals for the Excel workbooks are currently under development and will be live before April 2017.

 

Changelog v2s:

 

STRait Razorv2s

Changelog v2.5:

-updated locus config file

-added support for each base (i.e., all microvariants) within the allelic range

-updated flanks for CSF1PO, D3S1358;

-added loci: D20S482; D6S1043; D9S1122; DXS10103; DXS10148; DYS387S1; D1S1677; D9S2157

-added locus.config file support for individual kits

-PGM 24 Plex

-ForenSeq

-PowerSeq Auto

-PowerPlex Fusion

-GlobalFiler

 

Changelog v2.0:

-updated nomenclature

-updated locus config file

-added ‘allsequences.txt’ file for sequence-based analysis

 


Excel-based Analysis Files for versions prior to v2s*

Sequence-based Analysis v1.2

In order to utilize the potential sequence variation at each locus, the STRait Razor Analysis workbook was developed. This workbook allows users to take the STRait Razor output and perform more in depth analyses. Data may be exported into a separate sheet for fast compilation of a dataset. Two versions of this file are available**.

The standard edition*** is able to process up to 50k unique sequences and is more suitable for large multiplexes or samples with a high number of unique sequences (i.e., mixtures).

STRait Razor Sequence Analysis 

STRait Razor Sequence Analysis Manual

 

**Note: Choose your own adventure!!! When the standard edition of STRait Razor Analysis is just not lite enough still too cumbersome for your dataset or the computational capabilities of your computer, apply the following changes to the workbook to reduce processing times.

STRait Razor Analysis Minimization Protocol

***Note: The standard edition is now most suitable only for high read depth sequencing (e.g., PowerSeq runs with 100k X  coverage). The LITE version is recommended for most applications.

 

 

Changelog v1.2:

-Added batch processing for 24 samples (read one only) or 12 samples (read one and two)

-Changed Sequence output to a single strand consistent with the locus.config file

-Added the Allele Export tab to give added flexibility


Length-based Analysis

If simple length-based data are desired, STRait RazorGenotyper will convert raw STRait Razor data into a final genotype while also combining reads (if applicable). Data may be exported into a separate sheet for fast compilation of a dataset.

STRait RazorGenotyper

STRait RazorGenotyper Manual 

NEW!!!

v1.1 Changelog

-Added tab ‘Advanced Read Combiner’; allows combination of reads 1 & 2 of mixed samples


Data Visualization

STRait Razor Histogram Generator converts RazorGenotyper and Sequence Analysis output into mock electropherograms for easy data visualization.

STRait Razor Histogram Generator

STRait Razor Histogram Generator Manual

Mock Electropherogram

*Please note these files contain macros that must be enabled for proper functionality. All workbooks are in constant development and feedback is not only desired but expected to improve these workbooks. Any help provided is greatly appreciated. Please address Excel comments to Jonathan.King@unthsc.edu

This page was last modified on July 24, 2017